rs49890070 SNP Detail

Summary

• ID
  rs49890070
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148685674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACTAACA AAAATATAAA
  CAGGGGTTAA TTTTCATGCT AATAACAGAA ACATCACAGA GACAAAATTT TATTTCATTA
  GATTCCTCCC TCACCCCCAG GAAACAATAA AATAAGCGAA GGCATTTTAA AATGGAGGAT
  GTAACAATAT GTGAACTGCC TTTTGTGTAC ACTGTGGGTA CCACAGCACT CACAACCAAA
  W
  AGGCAAAGGG TGTTAGTGTT CCTCTTTATT CTCCTATTAA AGCAATCAGA GAAAGCACAA
  CTAGCCCGGT ATTTTATTCC CCACCACAGA AGCCCAGGGT ATCTTAACTC TAGGCTATAA
  TTTCTATTTG TTGACACAAT GAAGTAGTTT TGTATCGTAT CCATCTTTTT GTAAACATAC
  ACAGCCTATC AGTCTCCAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136065910	ENSMUSSNP3241354	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss321017011	CHEV_3_148643002	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49890070					SNP	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148685674 () rs orientation: forward

Symbol	Name	Function Class
Adgrl2	adhesion G protein-coupled receptor L2	Intron
Rr587237	regulatory region 587237	1119 bp distal
Rr587238	regulatory region 587238	1349 bp distal
Rr587239	regulatory region 587239	1800 bp proximal