rs49887307 SNP Detail

Summary

• ID
  rs49887307
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126455783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTTTCTG TTAGTGAAAC
  ACCAAAGCCT TGCACCCTGT AAAGAGGTCT ACTTAGTTCC TGTTCCATAT CTGTTTTGAT
  CTCTAGGGGC CTGAGAACAT GGTACCGCTT ACCGTCAATG GGTAGAGTCA TTTACACAGG
  AGGAAGCAAG AAGACCAATA GAGATAGCCC ATCATGCTTT TGGTCTTGTG GTAACCCATT
  Y
  ATTCCTCTGA GGTTTCAATC ACTCTCATGA GATGTGGTGT CTCTGGTGAC TGAACACCTC
  CCACTGGGTC TCATCTTTTA AGAGGTTCTA GTACTGTTCA GTGTTGCTGT TGTAGTCCAA
  GCATAGGAAC CTTTGGGGAT ATGAACCACG TCCAACCCAT AGCATCCTGT AAAACATCTT
  CTTTTATAGT GTAAACAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135838314	ENSMUSSNP1595556	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320947084	CHEV_3_126365052	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49887307					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126455783 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43005	predicted gene 43005			245 bp upstream
Rr397996	regulatory region 397996			within coordinates
Rr584671	regulatory region 584671			542 bp distal
Rr584672	regulatory region 584672			within coordinates
Rr584673	regulatory region 584673			1121 bp proximal