rs49886711 SNP Detail

Summary

• ID
  rs49886711
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105610591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTC TGCAGGGTGA AGATATAACT
  R
  TGTAAAAGGG GTGGGGCTTC AGGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135577609	ENSMUSSNP2416611	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss320863077	CHEV_3_105506193	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49886711					SNP	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105610591 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13661	CpG island 13661	1246 bp proximal
Inka2	inka box actin regulator 2	1324 bp upstream
Rr367522	regulatory region 367522	1147 bp upstream
Rr582755	regulatory region 582755	1276 bp distal
Rr582756	regulatory region 582756	834 bp proximal
Rr582757	regulatory region 582757	1693 bp proximal
Tssr31079	transcription start site region 31079	1382 bp upstream
Tssr31080	transcription start site region 31080	1413 bp upstream