rs49885357 SNP Detail

Summary

• ID
  rs49885357
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76867544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTACCTC CTTTACCTTG
  CCCTTCAGGC TGTAAGTAGT AAGTGGCCCG AGGGTGTAGA TAACCAACAC AGCCAGATAT
  GGGAGCCTTC CAGCTCACCC TAAAATTCCT CCAGCTACCT GACCATCATT TCCAAAGAAT
  GTGACATTTG TTCCTGTCCC TTTCAACTCA CAAGGACTTG CATTGCTGGA CCAAGTCTGG
  Y
  GTGGTTAATG GCAAGGGTCC TGCAGATTTC CCAGGCAGGA GGTGGGGGTA GCAGCCAGCC
  CCAAGAGCGC ATGCATGCCT GCTGCCAACT TGTAGAGAGG AGCCAGTGCG TTTTCCAAAC
  GTGCCATGAG GCCCGCCATT GCTTTCCACA TCTCTGGCCA GAGAAGCACT CTAGCTTCCT
  GATTCCCTTG TATAGCAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52376015	NES15271664	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49885357					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52376015	NES15271664	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76867544 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1753	CpG island 1753	756 bp proximal
Rr434375	regulatory region 434375	1645 bp distal
Rr434376	regulatory region 434376	484 bp proximal
Rr434377	regulatory region 434377	943 bp proximal
Rr434378	regulatory region 434378	1012 bp proximal
Rr434379	regulatory region 434379	1286 bp proximal
Rr434380	regulatory region 434380	1433 bp proximal
Rr434381	regulatory region 434381	1569 bp proximal
Slc19a1	solute carrier family 19 (folate transporter), member 1	559 bp upstream
Tssr94203	transcription start site region 94203	520 bp upstream
Tssr94204	transcription start site region 94204	548 bp upstream
Tssr94205	transcription start site region 94205	1001 bp upstream
Tssr94206	transcription start site region 94206	1530 bp upstream
Tssr94207	transcription start site region 94207	1550 bp upstream
Tssr94208	transcription start site region 94208	1580 bp upstream
Tssr94209	transcription start site region 94209	1594 bp upstream