rs49883313 SNP Detail

Summary

• ID
  rs49883313
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40446593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAGGTAG ACACCAAAGT
  TCACTCTGCT TAGAAAGTCC ATATTTGTTT TGGGGGAAGT TTGCTGTCAA AATGATAGTG
  CTATTTCCAA TAAATTACTA TTTTGAATAT ACTAAAGAGG GGAGGAAAGA AAGGGCAGTA
  TTTCCTAAAG TGTTCTCAGA CTAATACATT AAAAAAAAAA AACTAATTGT CACCAAGAAG
  R
  CAGTTATATG TAAAGATACA GGTTTGTTCA GAACAGCTGA GCATGCTCGA GTCATTAGCA
  GGCATGGTCT CTGTAGACAG TGGGCAACAG TCAAGGAAGG TTTTCCTACA CCAATCACGA
  GCTTTGGAGA TTACAGAGAA ACATTCATCT TTATTTATAC ATTAGCCAAG CAGAGTAAAT
  CACAGGAAGC AATTTTCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60393794	NES15889694	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49883313					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60393794	NES15889694	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40446593 () rs orientation: forward

Symbol	Name	Function Class
Rr575809	regulatory region 575809	344 bp distal
Rr575810	regulatory region 575810	599 bp distal