rs49879951 SNP Detail

Summary

• ID
  rs49879951
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:137251426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTCCTTT TCATTCAGTC
  CAAGACCTAG ACCAATTCAA TGGTGAGACC CACATTGGGA ATGGGTTGCC CCATGTCTGG
  ACCTGATCTA AATGACACCT CACAGGTATG CCCAGAAGCT CCTTTCCTTG GTGACTGTAG
  GTCCTGTCCA GTTGGCTGTT GATATTAGCC ATCACAGGGA TACTTTTCCA TCAGTTCTGC
  M
  ACTAACATCT GCCTCTAATT CTTCTTACTG AGCACTTACC AGACTGGGGG CCAAGGTCAG
  ATTACATATC ATTCTTTTTT GAGAAAGCAA GTATTCACTG AATGCCCATC ATTCATCAAG
  GGCATGAAGT TATTTTTGAA GACAAGTAGA ATGCTAACGA GAGATAGGTT GTGTCAGGAA
  TCAACAAAAC ATTTGCGCAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61085543	NES16600976	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49879951					SNP	A	A	A	A	A	A	C	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61085543	NES16600976	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137251426 () rs orientation: forward

Symbol	Name	Function Class
D3Mit349	DNA Segment, Chr 3 Massachusetts Institute of Technology 349	948 bp proximal
Rr585946	regulatory region 585946	1704 bp proximal