rs49876716 SNP Detail

Summary

• ID
  rs49876716
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:77000484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATACCCATC CCCCACCCCC
  AATAACTTAA AAGCTCAACA GTTATCCTGG TCCAGAGGAC TCAGCCCTAC CGGGATGAGG
  AGCCCTGGCC ATGTTGGGGG AGGAGCTGGT GTAAGCAACA CAAGCCGCGG CCCCCGCCCC
  CCCCCCCCCC ACTGAGCAGC TTTTGACTCA ACCTCCAGGA GGCAAAAGAA TCACATTCCT
  Y
  GGACATCTCT AGAGGGACCT CCCTGTCCCT GAGGGTGCAC CACTAAAACC CCCAACAGTA
  GCTACAGCAA GCAGAGAGAC ATCACCTTCC CAAGGTTATC CTTAGATCGC CAAGTTTACA
  GACACAGAGG TTTGTTCCAC CCAAAGGCTA AAATTACGAT CTATCACCTT TCTACACTTG
  AAACCAGTCT AGCTGGGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52373615	NES15269432	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs49876716					SNP	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52373615	NES15269432	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77000484 () rs orientation: forward

Symbol	Name	Function Class
Col18a1	collagen, type XVIII, alpha 1	Intron
Cpgi1754	CpG island 1754	788 bp proximal
Gm67721	predicted gene, 67721	1990 bp upstream
Rr434420	regulatory region 434420	1888 bp proximal
Tssr94211	transcription start site region 94211	1969 bp upstream
Tssr98227	transcription start site region 98227	1851 bp downstream
Tssr98228	transcription start site region 98228	1895 bp downstream