rs49875490 SNP Detail

Summary

• ID
  rs49875490
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:42029024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTATTAA ATTGTGCTGG
  AAATAATGCA CACAAAAATC CAGAGCAGAT TGAAAAATTT TAGTTCCGGG GTACTATTTT
  AAAGCTTAAT AAGAAAATTT TAACCATTTC AATATATTAT TAGAATAAGA TTCAAATGAA
  TTTCAGAAAA TTCATCCTAT TGGAAACAAG CTTCAAGTGC ACGATTTCCA ATAAAGTGGG
  M
  ATAAACATTT TTCCTTTACC TGACTGTTGG ACGAACCAAG ACTCAAGTAT GGGTGGCCAG
  CAGATGGCAG TATAACCCCA CTTTTTTTAA TTCCATGGCC GCACATGGAT CTGAAAATAC
  AGGCTTTTTT TTTTTTTTTT TTTTTAAATT ACAGTATTAA TGTAAGGCAG AACTGAAAAC
  TAATATATTC CACTGGTTAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60395657	NES15895193	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49875490					SNP	A	A	A	A	A	A	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60395657	NES15895193	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:42029024 () rs orientation: forward

Symbol	Name	Function Class
Rr576014	regulatory region 576014	within coordinates
Rr576015	regulatory region 576015	53 bp proximal