rs49874052 SNP Detail

Summary

• ID
  rs49874052
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:33973061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAAGATTT CATAGCAGTT
  ATTATTTTGC TATAACATTA TCAAAAAGCC GATTGAATTC AAAGCAGTTT CAACTAGAAA
  ACTCAGCTCA GCTCCCCATT TAGAATCAAA CACAAAAACT CCTTTTAGAG ATGGCTGTAA
  ATATTTGTTA GTTTACTGAT GAGATGGGAA AGGAGCAGAG GAGCGAAGAG ACTGGAAGAG
  R
  ATTTGGGCAG GCAGGTTCCC GAGGACTTTT CATCTACACT TACTAGCGCC CCCTGGTGGC
  GGCACACAGC CGCTAAACCC GCGTTTACAC AGGCTTCTGT TCTCAGAAGC TGCCCTTCCT
  TAGAAATGCA CTTAGGTACG GTTCAGGACA GGCCCGGAGC TCCCTCCAGA CTCCCTGCCC
  CAGTTGCTCT AAATCTGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss134760348	ENSMUSSNP4268617	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs49874052					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:33973061 () rs orientation: forward

Symbol	Name	Function Class
Rr575083	regulatory region 575083	404 bp distal
Rr575084	regulatory region 575084	within coordinates
Rr575085	regulatory region 575085	43 bp proximal