rs49872441 SNP Detail

Summary

• ID
  rs49872441
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:39513514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCACCATT TGTGTGCCTG
  GTACCTTCAG AGAACAGAAG AGAGTATGGA TTCTTTGTGA CTAGAGTTAC AGACTTTTGT
  GAGATAGGTT GTGGATTCTG AGAACTGAAC CCAGGATCTC AAGAGCAGCC AATGCTCTTA
  AGTGCTAAGC AATCTCTCCA GCCTGAGTTA AAATATTTTT TAAACTACCC AAGCTAAAGA
  K
  AATACTAAGA TCAACTTTAA TGCATACAGG CATTCCTCAA TGGGTAGATA GATAGATGGT
  ACATAGATAG ATGGATAGAT AGATAGATAG ATAGATAGAT AGATAGATAG ATGATAGAGC
  AGCATACTTA CATAAATAGA TGGATAAATA CATATATGTA TATGGATACA CAGATACACA
  GATCAATCCA AAGATTGAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	NOD/ShiLtJ	WSB/EiJ
ss60392731	NES15896473	PERLEGEN	MM_PANEL2	f	SNP	T		G	T	G	T	T	T	T	G
ss134850472	ENSMUSSNP1224775	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	NOD/ShiLtJ	WSB/EiJ
rs49872441					SNP	T	T	G	T	G	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60392731	NES15896473	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:39513514 () rs orientation: forward

Symbol	Name	Function Class
Gm30063	predicted gene, 30063	1415 bp upstream
Rr575757	regulatory region 575757	944 bp proximal
Rr575758	regulatory region 575758	1513 bp proximal