rs49871685 SNP Detail

Summary

• ID
  rs49871685
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:14953210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCCATCGGG CTTTTTAGCC AATAGTTATT TTCGGTCTTA
  ATGGAAAATA CAGGGACACC GGCAGGAGGT CCCTGCCACC ACAATTTGTG TCCGAAAGCT
  R
  AGATGTCACT CTGATTTCTT TCATAGGTCC TAGAAGTAGG CTAATTACTG TGAAGTGTCC
  TCAGGGACTG TCAGATATGT AGGGCATCAG GCAAGGTGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134618312	ENSMUSSNP7242756	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss320667960	CHEV_3_14888150	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49871685					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14953210 () rs orientation: forward

Symbol	Name	Function Class
Car2	carbonic anhydrase 2	Intron
Cpgi12992	CpG island 12992	936 bp distal
Rr573722	regulatory region 573722	1712 bp distal
Rr573723	regulatory region 573723	1990 bp distal
Rr573724	regulatory region 573724	576 bp distal
Rr573725	regulatory region 573725	1643 bp distal
Rr573726	regulatory region 573726	960 bp distal
Rr573727	regulatory region 573727	907 bp distal
Rr573728	regulatory region 573728	725 bp distal
Rr573729	regulatory region 573729	488 bp proximal
Rr573730	regulatory region 573730	919 bp proximal
Tssr826	transcription start site region 826	1830 bp downstream
Tssr827	transcription start site region 827	1723 bp downstream
Tssr828	transcription start site region 828	1667 bp downstream
Tssr829	transcription start site region 829	1581 bp downstream
Tssr830	transcription start site region 830	1535 bp downstream
Tssr831	transcription start site region 831	1502 bp downstream
Tssr832	transcription start site region 832	1429 bp downstream
Tssr28466	transcription start site region 28466	1450 bp downstream
Tssr28467	transcription start site region 28467	1291 bp downstream
Tssr28468	transcription start site region 28468	734 bp downstream