rs49867477 SNP Detail

Summary

• ID
  rs49867477
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104960516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGCAGAT ACCCTCGCCA
  ATCATAGCTT TACCCTTGCG GCTCTGAAAC CAATCCTCGC CGCCTGAAGG CGGGGCTTCT
  CCAAAGTCAT CCCGGCTCCT CCTGGGGCCG CAAGATCCCT TTTGTTTGGG AGAGCCAGGC
  TGGGATTGAG CTGGCGTCAC TTCCGGGAGG AAGTACCCTC CTCTGGTCCG CTGGAGTCTG
  K
  GCTCGCTCTG GTCTCCGCCC GGGTTCTGCA ACTTTTCAGG ACCCTGGGAA CACCTTGTGG
  TGGCTTAATT GAGGGTTTAT CTAAAATGTG AATAAAAGAA GTGAGTTTTA GCGTTTGTTT
  TCGAATTAGT ATTGAAAACC TAGTAACGTG TCTTCTTTGC CCCCCCCCCC TCTCTCTCTC
  TCTCTCTCTC CCTCTCTCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60431123	NES15934391	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs49867477					SNP	T	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60431123	NES15934391	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104960516 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13657	CpG island 13657	within coordinates
Cttnbp2nl	CTTNBP2 N-terminal like	54 bp upstream
Rr367520	regulatory region 367520	50 bp downstream
Rr582659	regulatory region 582659	260 bp distal
Rr582660	regulatory region 582660	within coordinates
Rr582661	regulatory region 582661	1340 bp proximal
Tssr34913	transcription start site region 34913	626 bp upstream
Tssr34914	transcription start site region 34914	483 bp upstream
Tssr34915	transcription start site region 34915	262 bp upstream
Tssr34916	transcription start site region 34916	213 bp upstream
Tssr34917	transcription start site region 34917	49 bp upstream
Tssr34918	transcription start site region 34918	1676 bp downstream