rs49866844 SNP Detail

Summary

• ID
  rs49866844
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:154034911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGGGCAGCA ATCTCTGGGA GTGTAGTAAT GACATCAGAG
  ATGCTCAGGC TAAAAGTCCC CTGGGGCTGT AGAGATGGCT CAGCAATTTA GAGGACTAGG
  K
  CCCATGTGGT GGTTGACAAC TATGGATAAC TCCAGTCCCA AAAAGTCCAA TGCCCTCTTC
  TAGACTCCAC AGGGTCAGGT ACATACATGT GGTTGGTGG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148023983	ENSMUSSNP2553676	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320569718	CHEV_2_154018727	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49866844					SNP	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154034911 () rs orientation: forward

Symbol	Name	Function Class
Bpifb1	BPI fold containing family B, member 1	Intron
Rr567775	regulatory region 567775	1957 bp distal
Rr567776	regulatory region 567776	1915 bp distal
Rr567777	regulatory region 567777	358 bp distal
Rr567778	regulatory region 567778	756 bp proximal
Tssr20976	transcription start site region 20976	1718 bp downstream
Tssr20977	transcription start site region 20977	364 bp upstream