rs49865836 SNP Detail

Summary

• ID
  rs49865836
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127646072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCTGGACG CACTGAGGGG
  GAACCAATGT CAGAGCCAGA GCTAGATCCA CAAGGATCCA CAAGGATCCT GAGTCAGAGG
  AGCAGGAGTT CTAACTGTCA AGCCCGGATG ACGGGGATAA TGTGCAATAA GCAGAAACAG
  TGGCTTTCGA CAGGCAGGCA GATGGCCAGG ATGAGACATG TGTCATGAGT TCATTTCAAA
  Y
  GGCTTTGGTT TGAGGTGCTT CGGGATGTTC ACTGCAGGAT GAACTGGAAA TGTGGCTGGA
  GTTGAGGATG TACAGCCAAG TGGGAGGCGA GGCGCAGACT CAAGCAGGCT TGCCAGCTCT
  GCTCCCTGGC TGTCTAGCTC ACCACACACT CTGCATAGCT CAAAAACTAT AAGGTTTATT
  TTGGGGGGAA AAAAGGAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135873110	ENSMUSSNP694561	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320957503	CHEV_3_127555341	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49865836					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127646072 () rs orientation: forward

Symbol	Name	Function Class
Rr584881	regulatory region 584881	1949 bp distal
Rr584882	regulatory region 584882	1984 bp distal
Rr584883	regulatory region 584883	413 bp distal
Rr584884	regulatory region 584884	344 bp proximal
Rr584885	regulatory region 584885	981 bp proximal
Rr584886	regulatory region 584886	1089 bp proximal