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rs49865162 SNP Detail
Summary
  • ID
    rs49865162
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr6:108282832 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GACTGATGGT TTGTTAATGG
    TTTGTTACAG TTTCCAGTGA GCCGCTTTGC TTTTAGAAAT CTACATGGCT CAAGGAGAGG
    AAAAGCAGGG CTAGGTTTTT CTGGAAAAAT CTATGGAATG TGCTCTCTTC CCATCTGTCT
    GGGTGCTTCT GTCTTCTCTT GTCATATGCC CACACTCTGG CTTGGTGACA TTTCTAAAAA
    M
    CCACAGGAGA CAGTGGCAGA ATCTAAGCTT GAACCCTGTA TTAGAGAGTT TTGTTTTCCT
    CCCCCACAGC CAACCTTTAT TATAACAATA GCAATCATCC CCTCTGCTAT TTATTGTAAA
    TTTTCTCAGC ATATAAAGGA CTCTTGGCAT AAGGGAGGAG GAAAATATAG TTTAAAGAAC
    CGAGTTGTTT CTTCTATAAG                                            
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
LG/J
SM/J
ss133499150 ENSMUSSNP4985871 ENSEMBL ENSEMBL_Sanger f SNP A A C
ss321892333 CHEV_6_108255865 CHEVERUD SCREENING_POP f SNP A C
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
LG/J
SM/J
rs49865162 SNP A A C A C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:108282832 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Itpr1 inositol 1,4,5-trisphosphate receptor 1 Intron
Rr636071 regulatory region 636071 231 bp distal
Rr636072 regulatory region 636072 370 bp proximal
Rr636073 regulatory region 636073 1109 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory