rs49865162 SNP Detail

Summary

• ID
  rs49865162
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108282832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTGATGGT TTGTTAATGG
  TTTGTTACAG TTTCCAGTGA GCCGCTTTGC TTTTAGAAAT CTACATGGCT CAAGGAGAGG
  AAAAGCAGGG CTAGGTTTTT CTGGAAAAAT CTATGGAATG TGCTCTCTTC CCATCTGTCT
  GGGTGCTTCT GTCTTCTCTT GTCATATGCC CACACTCTGG CTTGGTGACA TTTCTAAAAA
  M
  CCACAGGAGA CAGTGGCAGA ATCTAAGCTT GAACCCTGTA TTAGAGAGTT TTGTTTTCCT
  CCCCCACAGC CAACCTTTAT TATAACAATA GCAATCATCC CCTCTGCTAT TTATTGTAAA
  TTTTCTCAGC ATATAAAGGA CTCTTGGCAT AAGGGAGGAG GAAAATATAG TTTAAAGAAC
  CGAGTTGTTT CTTCTATAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133499150	ENSMUSSNP4985871	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
ss321892333	CHEV_6_108255865	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49865162					SNP	A	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108282832 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636071	regulatory region 636071	231 bp distal
Rr636072	regulatory region 636072	370 bp proximal
Rr636073	regulatory region 636073	1109 bp proximal