rs49865142 SNP Detail

Summary

• ID
  rs49865142
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:41353993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTTC CAGGATAGCC AGGGTACACA
  A
  AGAAACTCTA TCTTAGAAAA CAAGC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146402131	ENSMUSSNP2644025	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss325809394	CHEV_19_41440044	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49865142					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:41353993 () rs orientation: forward

Symbol	Name	Function Class
Pik3ap1	phosphoinositide-3-kinase adaptor protein 1	Intron
Rr405959	regulatory region 405959	1907 bp upstream
Rr547615	regulatory region 547615	124 bp proximal
Rr547616	regulatory region 547616	823 bp proximal
Rr547617	regulatory region 547617	1589 bp proximal
Tssr159300	transcription start site region 159300	1901 bp upstream
Tssr159301	transcription start site region 159301	1702 bp upstream
Tssr159302	transcription start site region 159302	1619 bp upstream
Tssr159303	transcription start site region 159303	1597 bp upstream