rs49864275 SNP Detail

Summary

• ID
  rs49864275
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:88039036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCTGACA CTTGAAACGT
  CAATCACTTG AAACTTCCTG GGTTATATGA GCATTTTTTT TTAATTTAAA AAGAGGGTTT
  CTCTGTGGAG CCCTGGCTGT CCTGGACCTC GCTCTGTAGA CCAGACTGAC CTCGAATTCA
  CAGAGCTCTG CCTGCCTCTG CCTCCCAAGA GCTGGGATTA AAGCCGTGCA CCACCACGCC
  Y
  GGCCTGATAT GAGCATCTTA TGATCTAATA AACAACTATT GCAGAAAATG AAGATGGTGA
  TGATCACCAG CTGTTTCAAA AACCCAAAGG ATGGGGTTAG GCAGCTCCTG GGGCTGACTG
  TGCAGAAGCC CCCGGGGCGA GGGTTGCACA CCTGCTAGGA TGTATGAGCC TAGAGTGAAG
  AAGCTCTGAG CCTCTCTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss133364816	ENSMUSSNP5270531	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs49864275					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:88039036 () rs orientation: forward

Symbol	Name	Function Class
Rr633809	regulatory region 633809	416 bp distal
Rr633810	regulatory region 633810	400 bp proximal
Tssr1927	transcription start site region 1927	1181 bp downstream
Tssr57564	transcription start site region 57564	1165 bp downstream
Tssr57565	transcription start site region 57565	1124 bp downstream