rs49863004 SNP Detail

Summary

• ID
  rs49863004
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19683360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGATTAGC TCAAATGGTA
  GAGCGCTCGC TTAGCATGCG AGAGGTAGCG GGATCGATGC CCGCATCCTC CAGTTCCCCT
  TTTTTTGTCT TTGCATTTCT GTAGTTTTTC TTTTCATTGT TATATACCTC AATTGAAGCC
  GAAAGACAGT AGGCAAAACT CAGCGAGATG ATTTTCAACC TTTCAACCTT GTATTTTGTG
  Y
  GGTGTCCAAA ACTTCCAGGC ATGCATTAAC CGGTATGCAA CAGCCGCTCC CCAGCAAAAC
  CCGGAAATAG ACCCAGCTTT AAACCCTGGC TAAGCTGAGG GTCCGGGGCT GTGTGGCTCC
  ACGGGGGACG AGGCCTAAGG GTGTATATCA TGGCGCTGGA GTGATTTTCT TCAGAAGCGT
  ACGGGACTCT AGTCTTCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60376860	NES15884479	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49863004					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60376860	NES15884479	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19683360 () rs orientation: forward

Symbol	Name	Function Class
1700064H15Rik	RIKEN cDNA 1700064H15 gene	463 bp upstream
Cpgi13003	CpG island 13003	119 bp distal
Cpgi13004	CpG island 13004	654 bp proximal
n-TAagc14	nuclear encoded tRNA alanine 14 (anticodon AGC)	129 bp downstream
n-TRacg3	nuclear encoded tRNA arginine 3 (anticodon ACG)	1165 bp upstream
n-TYgta1	nuclear encoded tRNA tyrosine 1 (anticodon GTA)	749 bp downstream
n-TYgta2	nuclear encoded tRNA tyrosine 2 (anticodon GTA)	326 bp downstream
Rr574008	regulatory region 574008	530 bp distal
Rr574009	regulatory region 574009	within coordinates
Rr574010	regulatory region 574010	1028 bp proximal
Tssr32702	transcription start site region 32702	511 bp upstream