rs49861972 SNP Detail

Summary

• ID
  rs49861972
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127996070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGAGGCGT GGTATAGCTG
  TGTTGTGGGT ACCCCTCAGC CTCCTGGATG GCTCACTCAG TGGTGAGGAT GGAGGCCGGT
  GCACCATCCA GGAGGACGTT GGCATTGCCT TCTCAGGAGT CAGCACCTAC AGCAGAGACT
  GCCAGAGTCC TTCCTGGTCT CACAGTCCAA AATTCAGTTT CCTATGATTA CTTGCCTTAC
  R
  TGCAAACCTG TTAGAAGTTT AAGACTCTTC AGTGTGGGCA TTGTATGTAA AACACCCATC
  CAACGGAGGG TGTGCCTATT CTCGGACGCT TTTGTCTCTA AGAACTTGGG ATAGGATACT
  GTCAGTCTAT AAAAAGGACT TATTTATTCA TCTTTTATTT ATGTGTATGT GCGCATCATG
  TGTGTGCAGG TTGTTCTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147553370	ENSMUSSNP3696477	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49861972					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127996070 () rs orientation: forward

Symbol	Name	Function Class
Bcl2l11	BCL2 like 11	Intron
Rr367305	regulatory region 367305	1056 bp downstream
Rr564661	regulatory region 564661	210 bp distal
Rr564662	regulatory region 564662	1348 bp proximal
Rr564663	regulatory region 564663	1971 bp proximal