rs49859185 SNP Detail

Summary

• ID
  rs49859185
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141169572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTACCTAT AGTTAATACT
  TTCTAACCTC AGGAAACCTT ATATCTCATT GCTTCTAATA AACCCACTTT ACAGATCAGG
  AAGTGGAGAC ACCTGGCCTT TTGAGCCATG CCATCCAGCT AGTAAATCAC TGTGGATTGA
  TCCGCCCATC TGGCATCAGC ACCTGACTAC CCACATTTCC TGATGTGCCC ATGTGGGGAG
  R
  TTGAAGAAAA TTAAGCGATT TTAAAGTGGC AGGCAAAGTC TCCATGGAAA TAAAAAGAAG
  CTAATTCTGT CAATGTCTCT CCCAAGAGTG ACCTTCCCAA GTCTATGAAA TCCATCCAAG
  GCATACATAA CGGGTAGAGG TTTCAATGGT GCTTGGCAGG CAGAATCACA AGGCATTAGA
  ATTAGAATAT TTCGAAGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61092726	NES16592181	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49859185					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61092726	NES16592181	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141169572 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13884	CpG island 13884	829 bp proximal
Gm15688	predicted gene 15688	within coordinates
Gm66152	predicted gene, 66152	within coordinates
Rr586318	regulatory region 586318	964 bp distal
Rr586319	regulatory region 586319	915 bp proximal
Rr586320	regulatory region 586320	1171 bp proximal
Rr586321	regulatory region 586321	1512 bp proximal
Rr586322	regulatory region 586322	1799 bp proximal
Rr586323	regulatory region 586323	1855 bp proximal
Tssr1065	transcription start site region 1065	884 bp upstream
Tssr1066	transcription start site region 1066	1450 bp upstream
Tssr1067	transcription start site region 1067	1843 bp upstream
Tssr32031	transcription start site region 32031	1305 bp upstream
Tssr32032	transcription start site region 32032	1368 bp upstream
Tssr32033	transcription start site region 32033	1560 bp upstream
Tssr32034	transcription start site region 32034	1675 bp upstream
Tssr32035	transcription start site region 32035	1731 bp upstream
Tssr32036	transcription start site region 32036	1756 bp upstream
Tssr32037	transcription start site region 32037	1781 bp upstream
Tssr35916	transcription start site region 35916	764 bp downstream
Unc5c	unc-5 netrin receptor C	1788 bp upstream