rs49857628 SNP Detail

Summary

• ID
  rs49857628
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52207488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGGAGAT CTGATGTCCT
  CTTTCTACCG GGTCTGTTTA TAAAGTGAAA TGGCGCTCCT GTAAAAATTC ACAGCTTTTA
  CAGTCCCGGT GACCTTGAGT TGTGTAGGTC ACTCTCTCTG TGCAGTAAAG CTGCTGTGAG
  GATTGACTGT CCTGCAGGAC CTCATTCAGA AACGCTGTGA GGTCCAGTTG TCTGCATTGT
  Y
  CATGCCTTTC CCAAGTAGAC AGGACTCATG GTCAGCACAT ACCCCGACGG GCAGACAGGT
  TAACCTTCAA ATTCAAGCTC TTTGAAGAGG TGAAGAAAGT GAGAACCAAT CATATAAGAG
  GTAATTTGGC TTCTGAGTAT CTCGGCCGGG TGGGCTTGTA TAGAACAAGT TGGCCATAGG
  GCTTCTTGCT GTGTTGAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60410056	NES15916038	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49857628					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60410056	NES15916038	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52207488 () rs orientation: forward

Symbol	Name	Function Class
Foxo1	forkhead box O1	Intron
Rr576497	regulatory region 576497	873 bp distal
Rr576498	regulatory region 576498	396 bp distal