rs49856285 SNP Detail

Summary

• ID
  rs49856285
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:129896054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CATGAAATGC CCCAGAAGAT GCAGTAAAGA GAAAGTGACT
  GGAGGGATGG CTCAGCCACT AAGAGCACTT TTTGCTTTTG TAGAGGACCC AGGTTTGATT
  Y
  CCAGGATCCA CATGGCAGTT CACAACTACC TGTCACACTA GATGCATCCA GGATATCCGA
  TGGCCTCTCT TGGCCTCCCT CGGCACTGTG CAGATGCAAT G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135891750	ENSMUSSNP4218754	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49856285					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129896054 () rs orientation: forward

Symbol	Name	Function Class
Rr585133	regulatory region 585133	953 bp proximal
Rr585134	regulatory region 585134	1184 bp proximal
Rr585135	regulatory region 585135	1270 bp proximal