rs49852287 SNP Detail

Summary

• ID
  rs49852287
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:60090972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGG CCGTGGCTCC AGCTCAGCTG
  Y
  AGTGCCTGCA CAGATCACAT CAAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132249163	ENSMUSSNP2992903	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49852287					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:60090972 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2979	CpG island 2979			within coordinates
Mir6921	microRNA 6921			392 bp downstream
Rai1	retinoic acid induced 1			949 bp downstream
Rr448349	regulatory region 448349			1619 bp distal
Rr448350	regulatory region 448350			302 bp distal
Rr448351	regulatory region 448351			65 bp distal
Srebf1	sterol regulatory element binding transcription factor 1			Coding-NonSynonymous
				Noncoding-Transcript-Variant
Tssr108277	transcription start site region 108277			693 bp upstream