rs49851082 SNP Detail

Summary

• ID
  rs49851082
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58975016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTTATTT CTTACCCTTT
  ATAGCTTTTC ACTCCACCCA ACTCTGTCTT TTCTGACTGA GTTCTGGGCT ATCAGTTCTG
  GTTGAAGAAA GCAACACGGC TCAGGTACAG ACGGTGTCGT CGGGGTCGGC CATGCTTGCG
  GCTGTGCTCG TCCCAGGGAC AGTCTAAGTT GGGAAGCTCA GGGTGCAGCC GGTGGATGTC
  M
  GTCCTTTAGT CAGACAGAAA GCTGGTGCAT GTGTGTGTGA CACTTGACAT GGAGTGGGAG
  AGGAAAGAAG CACACCCTAA GAGCTGCATT TGAGAAGTTT GGTGTACTGA GGTTTCTTAC
  AAATACTGTT CTCTGCTCTT CTGTTTTCTG TCGAACCTTC AGTAGTTTTG TGATGTTGCT
  GTTTGTCACA CATGTGACAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60415505	NES15911075	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49851082					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60415505	NES15911075	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58975016 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Med12l	mediator complex subunit 12-like			Intron
				Noncoding-Transcript-Variant
Rr577305	regulatory region 577305			1704 bp proximal