rs49847748 SNP Detail

Summary

• ID
  rs49847748
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:89230599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCAGAGCG CATCTTCTGG
  TAGTACGTGT GTCAGATTCC CCATCTAGGA CCATGNNNNN NNNNNNNNNN NNNNNNNNNN
  NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN
  NNNNNNNNNN NNNNNACCAT TTGCTTATGA CTACTCCACT TAGTCCTCAG CAGAAGACTA
  R
  ATGTCTGCTT CTGGGTGAAA CGTCTTCCCG CCCCCCCCTC GGGAGTCCGT CATTCACGGT
  TGCCAGTGTG CACAGGTAGA ATGGGAGGCG GAGGAAGAGA GATGGGTAGT TGAAATCAGA
  GCTTCTGAAG TGAAGGACAC TGGTGTTTTC CTAGCAAGTG GAAGAACTAA ACCAGCAGGT
  TGATATTGAT GAGTGTGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63332952	NES17507770	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49847748					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63332952	NES17507770	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:89230599 () rs orientation: forward

Symbol	Name	Function Class
Cdkn2b	cyclin dependent kinase inhibitor 2B	1323 bp upstream
Cpgi14441	CpG island 14441	1097 bp distal
Gm12610	predicted gene 12610	within coordinates
Rr398336	regulatory region 398336	1109 bp downstream
Rr595183	regulatory region 595183	1715 bp distal
Rr595184	regulatory region 595184	1189 bp distal
Rr595185	regulatory region 595185	925 bp distal
Rr595186	regulatory region 595186	1097 bp distal
Rr595187	regulatory region 595187	1109 bp proximal
Tssr42412	transcription start site region 42412	1347 bp upstream
Tssr42413	transcription start site region 42413	1337 bp upstream