rs49847708 SNP Detail

Summary

• ID
  rs49847708
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152592852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGGACTT TCCATAAGCA
  AGTCAATTGT TTAAGGAAAA AGGAAAGGAA GAAAAACAGC AAGAATGACT CTATCAATAC
  CCAAACAGGC CTTAGGTAAG AAAAGTTTAT ATGGCCCTAG ATGGTATATG GATATATGTA
  TACAAATTAA TCATCTACTG ATGATAAATC CTAAAGAAGT TTATTTTAAA CCAGTTCTTT
  R
  GCATTGATAT AATTTTCCAC TTACTAAAGA TGAAAGCAAA TTTGGATATT GATCAGATGG
  ATCCACTTAT TTATTTTTAC ATAAAGAAAT CTTGGCTGAA TGTTTTATCT TGAACATAGA
  CCATATTCAA TGTTTTTCAA AGCTGATCAA TATTTTGATT TTATGTTCAT CAGTGCCGAG
  AATGTTGCTT TGCATAGATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136104408	ENSMUSSNP6892421	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss321029048	CHEV_3_152550179	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49847708					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152592852 () rs orientation: forward

Symbol	Name	Function Class
D3Mit322	DNA Segment, Chr 3, Massachusetts Institute of Technology 322	541 bp distal
Rr587620	regulatory region 587620	336 bp distal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron