rs49845379 SNP Detail

Summary

• ID
  rs49845379
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121364780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCGTAGG TGTACAGGAA
  TGAGGGAAAC AGCCCGTCCT CCTTTGACTT CTTGAACGAT TCCTCCAGTC TGCTAGTGGG
  ACACTGGGAT GGACATTTGT CACTGGTAGA TAGACGGACA CCTGGAACTT CTTATGAGAA
  GTTTTTTAAT TCATCTTTGG AAAAAATAAG AACTGTTCAT GTCCACCCAC TATCCAGACA
  G
  TATTTTGTCA CAGCAGGATT GAGGTATGCT TGTTTTCTTA CAGGTTTGTC CGTTTTTGTG
  TTTTGAGACA GGGTCCCACT TTCTGTCTCA GTCTGCTTTG AAATCTGCTG ATTCTCCTGC
  CTTAGCTTCT CAAGGTTTAT AGCTCTGTGA CCAGGTCAGG CTTGAGATGT GCTCTGCAGA
  CAATGTTAGG ATTTAATCCT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147389690	ENSMUSSNP5525128	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49845379					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121364780 () rs orientation: forward

Symbol	Name	Function Class
Rr563846	regulatory region 563846	688 bp distal
Wdr76	WD repeat domain 76	Coding-Synonymous