rs49844909 SNP Detail

Summary

• ID
  rs49844909
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:60958887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTATCCC CAATACTGTT
  AGAGATTTGG GAGCTGATTA GTTCACGTAG TGGCTGTTCC TGGTTGTCAA CTTGACTATA
  TCTGGAATGA ACTACAATCC AGAATTGGAA GGCTCACCTG TGATCCAGAT CTTGAGGCTG
  GGAGAAATAA GTTTCTGACA TGGATTTTGG CCTGGAGATT TTGAGGCATA GTGGCTATGA
  R
  TCCCAGGAAT CCAAGGCAAG GAGAGCTGAG TTTAAGGTCA TCTGGGAAAA AGCAAGTCAG
  ATCCAGGCAT GGCAGCACAC ACCTTTAATC TGATCCACAC CTTCTGCTGG AGAACTACAG
  AAGGACATTG GAAGAAGGAA GACTCTCTCT TCTTTACCTG CTTGCTTTGT GGGACTGAGC
  AAGTGCTAGA TCCTTGGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss135222419	ENSMUSSNP6223004	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs49844909					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60958887 () rs orientation: forward

Symbol	Name	Function Class
Rr577470	regulatory region 577470	836 bp distal