rs49841990 SNP Detail

Summary

• ID
  rs49841990
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40499028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAAAGTTT AGCAGGTTGT
  GAGACACAAG TCTGAGTTGG AATCTGCATT CTAGTCTCGT TCTGTTGATG CCTGGAGATG
  AGATGTGTGG CCAGAAATTG GATGCGACAA CACTTCCCTT TCTTCATCTA TGATACGGGG
  TTGGCAGCAT TAATGAGCCA CAGGGACCTG CGATTGAGGG TCTGTAGTGG AGACACAGGC
  M
  CTACAACCTA AAGACGGGCA ATGGCTCAAC AATTCCAAAG ACCTGAGGTG GCCACTCTGA
  CACATTGCCT ACGGCCCATG TTTACTCTCT GACCCCCCAC AGTGTGCTAT CTAAGCACTC
  CAGGAAAAGA AAAAAGGATT GTTTAACCCT CACAGCAGTG ATCCCATGAG ATAAACATTA
  CCATCAAACT CACATGCAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ
ss60393554	NES15898190	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ
rs49841990					SNP	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60393554	NES15898190	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40499028 () rs orientation: forward

Symbol	Name	Function Class
Gm30184	predicted gene, 30184	within coordinates
Rr575816	regulatory region 575816	within coordinates
Rr575817	regulatory region 575817	424 bp distal