rs49836460 SNP Detail

Summary

• ID
  rs49836460
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:93966658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTAAGTG CTCATGCTTC
  CCAGACCCCC GAAGCTAGGA GCTTTTCAAG TCTTCATCAA AACTTTTCCA GATCTTGGGA
  TTGGTTCAGT CCCCCAGTCT ACGAATTTCC CACCTGAGTA TCATCTCCCA AGGGTGGCTT
  TAGGTGCTGG GCCCATAGTA TACCTGGACC CCCTTGCTTT GGGGTTGCCT CACAGGGCCA
  Y
  TCAAAGCAGG CTGTACTCAG ATCTCTCCAT TTCCAGGCAC AGAACCCACA GAGGCCATTG
  GCTATAGTGT CTCAAGTCCC TAGAAGTGCC CAACAGTAGG ATTCAGGAGA CATAGGCTTA
  GGCCCCAGCT CTGCACCTTG TGACAATAGG AAACCGGGAA GCCTGCTGCT CCCAGCTTGT
  GGTAAACCTG AAGTGAGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss60768974	NES16410936	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs49836460					SNP	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60768974	NES16410936	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:93966658 () rs orientation: forward

Symbol	Name	Function Class
Pdcd1	programmed cell death 1	mRNA-UTR