rs49834779 SNP Detail

Summary

• ID
  rs49834779
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95291443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACAGTAACA AAATGAACTT TATTCATCTA GAACTATACT
  GTGACTGTTT ACATACTTCA TCTATAGACT TTGAAAGAGC TAGCTAGCTA CAATAGGTAA
  Y
  GAAGAATAAA GCAATAAAAT AAGCAGTGAC CATCAACACC AAATGTAATG AGTTTCCACC
  TAAGTGTGAT ACTAACACAG CACATACGTT ATATAATTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136828274	ENSMUSSNP1065663	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss323100057	CHEV_9_95309809	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49834779					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95291443 () rs orientation: forward

Symbol	Name	Function Class
Gm8449	predicted gene 8449	1279 bp downstream
Gm35915	predicted gene, 35915	836 bp downstream
Gm37805	predicted gene, 37805	822 bp downstream
Rr684791	regulatory region 684791	1106 bp distal
Tssr86547	transcription start site region 86547	1951 bp downstream
Tssr90912	transcription start site region 90912	1611 bp upstream