rs49834310 SNP Detail

Summary

• ID
  rs49834310
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152591781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GCTATTCAGA TAATGTCTTT CAGATAATGC TCAGTGGGTG
  TGAGTTTAAA TAACCCAAGG TCCTAGCTTG CAAATACGGG TATTTGCCAT GTGAGCATTG
  T
  CCTGTAGCTA TTCTCAACCC CCGATTTCAC CCTATCATGT ACACATAGCT ACAGACAGGA
  GTCTTTAAGA TAACCTTATA TTTGCTCCAC ACAAGTCAGT A                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss136104384	ENSMUSSNP2484053	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs49834310					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152591781 () rs orientation: forward

Symbol	Name	Function Class
Rr587620	regulatory region 587620	714 bp proximal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron
Tssr32421	transcription start site region 32421	1851 bp downstream
Tssr32422	transcription start site region 32422	1778 bp downstream