rs49828929 SNP Detail

Summary

• ID
  rs49828929
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:25708415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAACTTGG GATAGAATGA
  ACTGCATAAT TTGTATTGTA GATGGCTTGC TTCAGACATA AATAAAATCT GTAAACAGAT
  TATCATATTG AAATGATAGC ATCACATGAT ATGTTTCTAA CATTTATGAA ATAATCAGGA
  AAGGGTTTTA CAATTTTTAA AGAAAACAAA GGTGCAATCC AGTTGATGTT TTACTGACAC
  R
  TTGCTGTTTA GCTGCTCTTC ACTTAAGATC TTCAGTTAGG GAGGCAGTTT GCAAGTTAGA
  GAAAAGAATG GGAGACTGAA GAGACCTGTA TATCAATTCT ATCACTCATG GGCTATCACA
  ATGTGGTACT CATTTCCTGT GTGACTCTCA GGCTAGAATA ATCAAAGTAG ATTTCCATGG
  GACAGAAATA AATTATATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60873596	NES15975972	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49828929					SNP	A	A	A	A	A	A	G	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60873596	NES15975972	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:25708415 () rs orientation: forward

Symbol	Name	Function Class
Rr627304	regulatory region 627304	602 bp distal
Rr627305	regulatory region 627305	1008 bp proximal