rs49828620 SNP Detail

Summary

• ID
  rs49828620
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:97980822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAGTCAG TGCGGGCACC
  CTTCTTACTC CCTATATAAA CAGATCATAT AATTCTGTGT GAGTCCTCAG ACTTTCCTGT
  TTTAAAAACA CAGTTCTTTA TAGCAAAGAG TGTTGTTTCC ATAAAGCCTG AAATAGAGTA
  TGAGTTTTAT TGAAAAAAAA CAAAAACAAA AACAAAAAAA CCTCTGCAGT CAGTCAACAC
  Y
  CATTGCTGTT CTTGTCTGTG TCTAGTTACC CGTCTCTGGA AACTTGATCG ACCTCTACAG
  CAACCAGGGC CTGCCACCGC CAGGCCTTAC CATCAGCAAC TCCTGTCCAG CCAACCTTCC
  CAACATAAAA AGGGAGCTCA CAGGTACGTA CCTAGCACAA ATGCTTCTTA CTATGATACT
  CTGTTCTCTT CCCCACTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60914485	NES16220858	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49828620					SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60914485	NES16220858	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97980822 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	Intron
Rr635252	regulatory region 635252	361 bp distal
Rr635253	regulatory region 635253	471 bp distal
Rr635254	regulatory region 635254	306 bp distal
Rr635255	regulatory region 635255	1821 bp proximal
Rr635256	regulatory region 635256	1892 bp proximal
Tssr57947	transcription start site region 57947	895 bp upstream
Tssr57948	transcription start site region 57948	1214 bp upstream