rs49828100 SNP Detail

Summary

• ID
  rs49828100
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138950764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCCTTATT CAGTGTGGTG
  TTCTTAGTAT TTACCGCAGT GCCTAGGATA TGGTAAGGAC TTGAGTGATA GGTATTGTAT
  AAAAGCGTGA TTTCCTCATA CTGTCATGTC ATTTTATATC ATGTAGGACC TTACATTTCT
  AATAAAATAG TATTGATGTC TTAACTTTGA GTTCACATTT AGAAAAACTG TTTTAACTTA
  Y
  AGTTCTTTCT TTATCTCCAG TTTTGATTTG TTTTTGCATT GTCTTTCACT TATCGTAATT
  ATAAGATATG TGGCAACATA TTATCTCATG AATATCATAT TGTACATCAC TATTTTTTGT
  TGCACATGGA AAACTCTAGG ACATATTGAT GGTAATTTTA GAAATTGTAT TGTGTCAAGG
  AAGTGGTTGG CAGAATACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61086178	NES16599408	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49828100					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61086178	NES16599408	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138950764 () rs orientation: forward

Symbol	Name	Function Class
Rr398077	regulatory region 398077	248 bp upstream
Rr586253	regulatory region 586253	289 bp proximal
Rr586254	regulatory region 586254	1491 bp proximal
Rr586255	regulatory region 586255	1711 bp proximal
Stpg2	sperm tail PG rich repeat containing 2	Intron