rs49827297 SNP Detail

Summary

• ID
  rs49827297
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147602441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTCATTCTA TAACCATTTA TACACACACT
  TCTTGTCTAT GGTACAGCAA GCATATGGTG ATGGTTGACA AAATAGGTCC AAGTAGACTC
  ACTGAATTAT GTGGAAGACA GCATGTGTAT ATTGATAAAG ATGCAAATAC TTGGCTCAGG
  A
  AAATTAACCA TATCATGTTT AAAAAACATG GAGGCTGAAG CTCACTGGAT TTGGAACATT
  AACTATTTGT GGAAGAGCAC TGTAAAATGC TTAATAAGCA TATGAGCCTG ATGGGCATTT
  CTAGATCTTC CAGTGGCTAG ATTTTAAGGA                                 
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss147966770	ENSMUSSNP4812844	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321414778	CHEV_4_146892093	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs49827297					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147602441 () rs orientation: forward

Symbol	Name	Function Class
Gm69897	predicted gene, 69897	within coordinates
Rr398830	regulatory region 398830	1649 bp upstream
Rr604494	regulatory region 604494	1001 bp proximal