rs49826935 SNP Detail

Summary

• ID
  rs49826935
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150171724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATGG GAGGAGCTTG AAGGAGGCTG
  R
  GCGGGGCTCT GGGGCTACAG GGCGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148046916	ENSMUSSNP2172217	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321428025	CHEV_4_149461376	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49826935					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150171724 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15345	CpG island 15345	within coordinates
Gpr157	G protein-coupled receptor 157	236 bp upstream
Rr398878	regulatory region 398878	within coordinates
Rr605170	regulatory region 605170	1598 bp distal
Rr605171	regulatory region 605171	1680 bp distal
Rr605172	regulatory region 605172	within coordinates
Rr605173	regulatory region 605173	446 bp proximal
Rr605174	regulatory region 605174	758 bp proximal
Rr605175	regulatory region 605175	1790 bp proximal
Tssr40369	transcription start site region 40369	246 bp upstream
Tssr40370	transcription start site region 40370	379 bp upstream