rs49825511 SNP Detail

Summary

• ID
  rs49825511
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108730293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTTAACCA ATCAGAAATA
  TTGATTGTTA TGATCCCCTC TTTTCCATCT GAAAACATGC TAATTCACCC CAGTAAAGGA
  GCAAAAATCT CTTTGTTCAT TTTTGGATGT TCACTCCTAT TGTAGTGTAT TTACACTGCC
  AAGGTAATGT CCCATGGCTT AAACACTGAA AGATAGTGTT ACCAGCTCTT GTATTACATC
  K
  CAGGGTAATG AAAGCATATG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTT TGTGTGTTTA
  GGAGAGGGAT TCAGAGATGT AACATAGCTG CTAGAGTGTT TGCCTCGCAC ATAGGAGAAT
  CTGAGTTCTA TCTGTTGCAT AAGCAGGGTT TGGTGGCATA CTCTATAATC CTGGCACATG
  GGAAGTGGTG GCAGGAAGAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss133508788	ENSMUSSNP5039866	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
ss321893996	CHEV_6_108703326	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49825511					SNP	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108730293 () rs orientation: forward

Symbol	Name	Function Class
Rr636193	regulatory region 636193	594 bp distal
Rr636194	regulatory region 636194	573 bp proximal