rs49824905 SNP Detail

Summary

• ID
  rs49824905
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19717479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAGTTGTA ATTATCCCAT
  CTTAGATTTA CACATCACCA AAATAAATTT CCTTTCTTCT CTACACTCAT ATTGCTAAAA
  ATATCTTGGG TACTTGGAGA TTTACTTTCT GAAGAAATAT TTTCTTTGGC AAAGAGCCGA
  AGAGATTCAG AAATGAACAA TATAAACTGT TTCCTCTTAT TTACAATGAA GATCAGTCAG
  Y
  CACTGGCCAT GAATCAGCAG TCCACTGTGT GCTAGGTTGA GTCTTGTGTG TTATAAATAG
  CCTGTTACTT GTGTTGAGCG AGGCAATCTC TAGCCACCTC CTGAGACTCT CAATGGAGAG
  TCTGGCTTCC TGTCTGGGAT AAAGACATCA AAAGATGTGT GGAAAGTCCT GTGGTCCACT
  GAAGTCTTGA GTGAGGGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60376661	NES15883793	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49824905					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60376661	NES15883793	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19717479 () rs orientation: forward

Symbol	Name	Function Class
Rr574018	regulatory region 574018	within coordinates
Rr574019	regulatory region 574019	1127 bp proximal
Trim55	tripartite motif-containing 55	Intron