rs49824659 SNP Detail

Summary

• ID
  rs49824659
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156487020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCA CTCGAGAGGC AGAGGCAGGC
  G
  GATTTCTGAG TTCGAGGCCA GCCTG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145801443	ENSMUSSNP868466	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49824659					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156487020 () rs orientation: forward

Symbol	Name	Function Class
Rr421217	regulatory region 421217	1990 bp distal
Rr421218	regulatory region 421218	1375 bp distal
Rr421219	regulatory region 421219	324 bp distal
Rr421220	regulatory region 421220	503 bp proximal
Rr421221	regulatory region 421221	1417 bp proximal
Tor3a	torsin family 3, member A	Intron