rs49823325 SNP Detail

Summary

• ID
  rs49823325
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:18818097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCCTGTA TGCTAAGAAA
  GAGATAGCTG ATTTTTCCAT GAGTGGGTGA ACAGGGCGTG GGGAGTAGAG ATTGCTTTAA
  TGAGACTGTT ATGTTTGAAT AATTGGAATA ATCATCATCA GTTGCTGGAA CTGTTTGGGA
  AGAATTGGAG GAGTGGTGCT GGTGGTGGGC ATTCTCAGGT AGTGCTCTGT CTGTCTGTCC
  R
  TCTGATGCTT GTGGATTAGG AGGTAAGCTC TCAGCTAATG TGCCAGTGCC ATACCTACCT
  GCCTGCCTGC TGCCATGCTC CACACCATGG TGGGCATAAA CTGGAGCCTG CTGGAATCAT
  GAGCTCCAGC AAACATTTTC TTTTATAAGC TGCCTTGGCC TTGGTGTCTC TTCACAGCAA
  CAGAGAAGTA GTTAGGACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133041740	ENSMUSSNP192192	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49823325					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18818097 () rs orientation: forward

Symbol	Name	Function Class
Rr626951	regulatory region 626951	1328 bp proximal
Rr626952	regulatory region 626952	1454 bp proximal