rs49822960 SNP Detail

Summary

• ID
  rs49822960
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148267419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGGTTCT CTTAGGGTAG
  GATTGTCCCT GTGTGGTGGC TTGGTAGCTT TGGGAGGTGG GGGACATTTT CTTTTCTGCG
  TCCTGTGTGC TTGAGCAGCC GGGTAGAGCT CAGAGGGTGA CTGGCAGGTC TTGGCGCTCT
  CCTTCGCCTT GTGGGTCTTG GGGATTGAAC TCAGGTTGTC AGGCTCCGTG TCTGTTCTGC
  G
  GGGTCATCTC ACTGGCCACT CCCCCTCTTG ATAGACAGGG ACGGAGTGTG GAGCTCACTG
  ATTGGCTAGA CTGGAATGCG GCCCTGGAAT CTTCCTTTTC CCACCTCCCC ATGCTGGAGT
  TTCAGCCCAT GCTGTGCGCT GGCTTGTTAC ATGGGTTCTG AGTTTTGAAC TCAGGTCCTC
  ATGTGCCGCA AGCAGTTTCT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147995323	ENSMUSSNP5425039	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49822960					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148267419 () rs orientation: forward

Symbol	Name	Function Class
Gm68601	predicted gene, 68601	within coordinates
Rr604623	regulatory region 604623	within coordinates
Rr604624	regulatory region 604624	1409 bp proximal