rs49822590 SNP Detail

Summary

• ID
  rs49822590
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130908956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAGTTCA ATTCTCAGCA
  ACCACATGGT GGCTCACAAC CATCTGTAAT GGGATCCAAT GTCCTCTTCT GGTGTGTCTG
  AAGACAGTGA CAGTGTACCT ACATACATGA AATAAATAAA TAAATATCTG AGAGAGACAG
  ACAGACAGAC ACTGGCTAGT CATCTCACAA TGTTCTCATG TTTAAAATAT GATACCATTT
  K
  TATAAAGCAG AAACACAGGA AAAATAAAAT CTGTGGTATT ATATTTGATT TTTAAATTAA
  CTTGATTAGT GAAGTTAGCA GCTACACTGG GCAGGGGTTG GGAGTGGGGT ACTCTGAAGT
  GCTGGTATTT CTGGTTTTGT TTTTTGTTTG TTTGTTTTTT TATCTTATTT ATATTACATA
  GAAAGCCATT TTGCTAATAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147598332	ENSMUSSNP6527224	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49822590					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130908956 () rs orientation: forward

Symbol	Name	Function Class
Rr565176	regulatory region 565176	584 bp proximal
Tssr20240	transcription start site region 20240	1676 bp upstream
Tssr26336	transcription start site region 26336	250 bp downstream
Tssr26337	transcription start site region 26337	1089 bp downstream
Tssr26338	transcription start site region 26338	1419 bp downstream
Tssr26339	transcription start site region 26339	1493 bp downstream
Tssr26340	transcription start site region 26340	1575 bp downstream
Tssr26341	transcription start site region 26341	1840 bp downstream
Tssr26342	transcription start site region 26342	1861 bp downstream
Tssr26343	transcription start site region 26343	1915 bp downstream
Tssr26344	transcription start site region 26344	1970 bp downstream