rs49821519 SNP Detail

Summary

• ID
  rs49821519
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:149960170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAA CACTTACACT GAGAGCCCCA
  Y
  TGGACGCCAG ACTGAGGTCT ACTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148042289	ENSMUSSNP2707961	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321427089	CHEV_4_149249822	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49821519					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149960170 () rs orientation: forward

Symbol	Name	Function Class
Rr367784	regulatory region 367784	594 bp upstream
Rr605091	regulatory region 605091	1366 bp distal
Rr605092	regulatory region 605092	1693 bp proximal