rs49819403 SNP Detail

Summary

• ID
  rs49819403
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141231817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACCTCGGC CTAAAGCTGT
  TCCCTCTAAA TGCGGCCATT TCTTTAGAAT TTTCACCAAA GACACAAAGC CATAATGCAC
  AATGGCTGTG GCACTGTGAC AGGGCACATT CAAAAGCAGC TGTCCCTGCG AGAATCAAGA
  GGATCCCAGG AGGCCTGGGG TTTCATGTAG GAATGGTCAC CTGCAGCAGC CCAGCCCACG
  M
  CACTGCAGTC ACAGATGCAC AGTAGGAACC TCTCTGAAGA CCTTAGTGGG CACTTTAAAA
  CCCTTCACAC TACCCTTCCT TTCCCCATCA GCAGTGAGTG TAGCCAGCTG TGGTGGCCCA
  GAGTGAGGCA GGAGCCTGGA GAGGTGCCCA GTGGTTAACA GCCCTACCTT GAGGACCACA
  GTTCATACCT CAGGACTGAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147739626	ENSMUSSNP6108938	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss321387723	CHEV_4_141060421	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49819403					SNP	C	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141231817 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr603780	regulatory region 603780			53 bp proximal
Rr603781	regulatory region 603781			1426 bp proximal
Spen	spen family transcription repressor			Intron
				Noncoding-Transcript-Variant