rs49818968 SNP Detail

Summary

• ID
  rs49818968
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:36213773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTAATAA TAATCTTTGT
  GGAGTAGAAT ATTGTGTTAT GCAGTTTACA GCAAATAAAA TTCACAATTT TAAAGGTAGA
  TTCTTAGGAA TTTTCATATT CATGTCTATT TGTGTATTGG CACACTAGTT AGTTTTTTTC
  AACTTGATAC ATTCAAAGGC CATCTGGAAA GAGAGGGCCC AATTGAAAAA ATGTGTTCAT
  Y
  AGGATGGACT GCAGAAACAT CTTCAGGGCA CTTTCTTGAT TAATGATGTG GAAGACCTAA
  CCCATTTTGG GTGGTATCTG GACGAATGAT CTCAGGTATA TAAGAAAGCC ACTGAGCAAG
  CCAGTAAGTA GTGATCTCCA TGGTCTCTGC TTCAGTCCTT GGCTCCAGGT TTCTGTCCTG
  AACTCCTGTC CTGGCTTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133117449	ENSMUSSNP6589623	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss321784583	CHEV_6_36186838	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49818968					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:36213773 () rs orientation: forward

Symbol	Name	Function Class
Gm57759	predicted gene, 57759	1735 bp upstream
Gm67063	predicted gene, 67063	within coordinates
Rr628531	regulatory region 628531	1998 bp proximal