rs49818351 SNP Detail

Summary

• ID
  rs49818351
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148023717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTCTACCAC ATAGGTCCTA GGTACAGAAC TTAGGTCATC
  ACACTTGCTG GCGAATGCTT TTACCTGCTG AGCCATCTTG CCATTAGATT TTTATTTTAA
  Y
  TTTAAGGTTC TGGGAAATCA CTAGTGCTAG AGGAATATTC TGTTCTGAGC TAATAGTCTG
  CTAAAAAAAA AAGTGTGGTT GTTTTAGTTT GTTTTGAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147987474	ENSMUSSNP2585252	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49818351					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148023717 () rs orientation: forward

Symbol	Name	Function Class
2510039O18Rik	RIKEN cDNA 2510039O18 gene	1635 bp upstream
Cpgi15285	CpG island 15285	1387 bp proximal
Rr377387	regulatory region 377387	1246 bp downstream
Rr398852	regulatory region 398852	1446 bp upstream
Rr604527	regulatory region 604527	1438 bp distal
Rr604528	regulatory region 604528	171 bp distal
Rr604529	regulatory region 604529	1145 bp proximal
Rr604530	regulatory region 604530	1592 bp proximal
Tssr40235	transcription start site region 40235	1599 bp upstream
Tssr40236	transcription start site region 40236	1666 bp upstream