rs49817199 SNP Detail

Summary

• ID
  rs49817199
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27657864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTATGGGGG ACTTTTGGGA
  TAGCATTCTA AATATAATTG AGGAAAATAC GTAATAATAA AAAATATTTA AACAAAACAA
  AACAAAAACA AAAACAAAAA AAGAAAAGTT CAACCTTTAG GTTCAATGTG GGGAGGGGAA
  GAAGGCAAGC AGAGGGTGAT GGGGAAAAAA AACTTTCTTT TAAGAAACAG TGTGTGTGGG
  K
  GGGGGGGGGG GTCCCAGGGA TCAGACTCAG GTTGTTAGTC TTGGCAGAAA GCACCCATAC
  CCCCTGAGCT CTCTTGCTAG CTTTGATACT CTTTCTTCAC ACCTAACATA AGGCTATTCC
  CTGGCAGCCT GAGTAGTTCA GCACAGGTGC CTGCAGGACA GCACCGCGAT GAGGCAGTTA
  CCTACTCTGC AGCTAGTCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	MOLF/EiJ	NZB/BlNJ	PWK/PhJ	SPRET/EiJ	WSB/EiJ
ss357349252	MGP_WTSI_3_27502637	EVA_MGPV3	EVA_MGPV3	f	SNP	T	G	G	G	G	G	G	G	G	T	T	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	MOLF/EiJ	NZB/BlNJ	PWK/PhJ	SPRET/EiJ	WSB/EiJ
rs49817199					SNP	T	G	G	G	G	G	G	G	G	T	T	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357349252	MGP_WTSI_3_27502637	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27657864 () rs orientation: forward

Symbol	Name	Function Class
Fndc3b	fibronectin type III domain containing 3B	Intron
Rr574448	regulatory region 574448	72 bp proximal
Rr574449	regulatory region 574449	368 bp proximal
Tssr32851	transcription start site region 32851	1987 bp downstream