rs49816912 SNP Detail

Summary

• ID
  rs49816912
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142327105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAA TCAAGTCACT GCAGCTCATT
  Y
  AAACGTGGGC ATAAGGCCAC CTAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321003282	CHEV_3_142284308	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49816912					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142327105 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	Intron
Rr398088	regulatory region 398088	1161 bp downstream
Rr586458	regulatory region 586458	732 bp distal
Rr586459	regulatory region 586459	within coordinates
Tssr32227	transcription start site region 32227	717 bp downstream
Tssr32228	transcription start site region 32228	679 bp downstream
Tssr32229	transcription start site region 32229	640 bp downstream
Tssr32230	transcription start site region 32230	611 bp downstream
Tssr32231	transcription start site region 32231	594 bp downstream
Tssr32232	transcription start site region 32232	53 bp downstream