rs49816895 SNP Detail

Summary

• ID
  rs49816895
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:55682590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATAAAAT AACTGGATGG
  CTCATGCCTG CAACCCTAGT ACTTGAAAGG CAGAAGGAGA AAAATTATGA GTCTGAGGCC
  AGCCTGGGCT AACATAGCAA TACCTTACTT CTACCCACCT CCTCAAATCA AGGAAAAAAC
  TGTTGTGATT ACAGTTGAGT ACTTTGCTTT CAAGCCCTGG CTTGTCCACT TCCTGGTTCT
  R
  TTACACTGGG AGTTTCTTTG CCTGAAAACC CAGGAACAAT GAGTATGCTG AGAGAGGGTG
  ATCCTAGGAC AGGATGCTGA TGGTCTTTGC TTTTGTTTTT GTCTCATCTC CCTTGTCAAT
  CAACTAGAAA AAGGTAACAC TAACAAGGGA GATTATTCCT CTGAAAATGG CCAAATGATT
  AATCCTATGA AATATCCTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss133214627	ENSMUSSNP1552562	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49816895					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:55682590 () rs orientation: forward

Symbol	Name	Function Class
Rr406317	regulatory region 406317	808 bp distal
Rr631016	regulatory region 631016	1211 bp distal